Introduction | Citation | Installation | Using BioCor | Preparation | Pathway similarities | Combining values | Gene similarities | Gene cluster similarities | By pathways | By genes | Converting similarities | High volumes of gene similarities | An example of usage | Comparing with GOSemSim | WGCNA and BioCor | FAQ | How is defined the pathway similarity? | Why does BioCor use the dice coefficient and not the Jaccard ? | How does BioCor combine similarities between several pathways of two genes? | Why do you recommend using the max method to combine similarities scores for pathways? | How to detect which functional relationship is more important between two genes? | How to detect with which genes is my gene of interest related? | Why isn't available a method for calculating GO similarities? | I get an error! How do I solve this? | Session Info

Introduction | Merging similarities | Assessing a differential study | Obtaining data | Selecting differentially expressed genes | Are differentially expressed genes selected by their functionality? | Are functionally related the selected differentially expressed genes? | Influence of the fold change in the functionally similarity of the genes | Assessing a new pathway | Merging sources of information | Comparing with GO similarities | Session Info

Keeping up with the repositories | Improving packages | Connecting help pages | Reproducibility | Local versions | Risk of being archived

Introduction | Previous work | Design of Experiment | Randomization | Randomization and replicates | Layout | Report for easy on field usage | Compare indices | Unbalanced setting | Quality check | Internals | SessionInfo